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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_62149616_62158042_F

Intron Information:

Intron Rank:
143369
Intron Class:
major
Intron Phase:
Intron Coordinates:
62149616 - 62158042
Intron Length:
8427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTGGT
5'SS Class:
major
3'SS Sequence:
TTTTCATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTAGCATCAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
70.6
39.7
Major BPS
100
1.24
0.5
100
0
Major PPT
91.2
0.93
0.7
89.3
26.1
Minor 5ss
40.6
-1
3.2
55
44.5
Minor BPS
50.2
0
1.9
65.86
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027244
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042674
62149076 - 62158181
9106