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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_62155136_62156547_F

Intron Information:

Intron Rank:
143368
Intron Class:
major
Intron Phase:
Intron Coordinates:
62155136 - 62156547
Intron Length:
1412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTTCG
5'SS Class:
major
3'SS Sequence:
AATATTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.3
65
41.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
68.9
0.42
1
63.2
42
Minor 5ss
42
-0.9
2.5
50.8
45.6
Minor BPS
62.8
0.4
1.9
76.51
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027244
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030704
62149076 - 62156649
7574