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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_62248505_62251704_R

Intron Information:

Intron Rank:
155047
Intron Class:
major
Intron Phase:
Intron Coordinates:
62248505 - 62251704
Intron Length:
3200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TTTCCTCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.8
1.03
0.7
89.6
22.7
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
81.9
0.72
0.9
76.3
37.7
Minor 5ss
32.9
-1.9
2.7
43.2
43.8
Minor BPS
68.9
0.59
1.6
81.78
32.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030917
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019795
62247366 - 62252045
4680