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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_62251838_62251924_R

Intron Information:

Intron Rank:
155048
Intron Class:
major
Intron Phase:
Intron Coordinates:
62251838 - 62251924
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGGGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTCTCCTACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.2
30.7
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
76.9
0.61
0.8
71.4
34.3
Minor 5ss
36.9
-1.5
3.2
48.5
47.7
Minor BPS
49.8
-0
1.9
68.95
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030917
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019795
62247366 - 62252045
4680