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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6226895_6227274_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6226895 - 6227274
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AATATTTTATTT
Flanking Amino Acid:
YSIKGPKIKTGDETLQKINV
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
80.3
34.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.5
0.82
0.8
78.3
39.6
Minor 5ss
35.2
-1.7
3.1
49.5
46.7
Minor BPS
52.2
0.15
1.5
67.55
37.7

Associated Gene:

Gene:
PRRG4
Ensembl Gene ID:
ENSAPLG00000006630
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006884
6225854 - 6232371
6518