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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6227324_6228554_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6227324 - 6228554
Intron Length:
1231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGTTGTT
5'SS Class:
major
3'SS Sequence:
TGTATTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TCTTTTATAAAT
Flanking Amino Acid:
REVFEDPDKTMDFWKDYSIK
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
69.4
41.5
Major BPS
78.6
0.71
1
78.6
31
Major PPT
81.6
0.71
0.8
76.6
37.5
Minor 5ss
37.8
-1.4
3.7
58
46.6
Minor BPS
58.5
0.34
1.7
77.39
39.2

Associated Gene:

Gene:
PRRG4
Ensembl Gene ID:
ENSAPLG00000006630
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006884
6225854 - 6232371
6518