About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6228719_6231440_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6228719 - 6231440
Intron Length:
2722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACTGAC
5'SS Class:
major
3'SS Sequence:
TTTTTTAAACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAC
Flanking Amino Acid:
NDPKHPESEDVFTSAKEANL
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1.2
68.5
36.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73
0.52
1
68.9
41
Minor 5ss
38.7
-1.3
3.2
48.8
42.8
Minor BPS
76.4
0.81
1.2
82.98
29.8

Associated Gene:

Gene:
PRRG4
Ensembl Gene ID:
ENSAPLG00000006630
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006884
6225854 - 6232371
6518