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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_62316941_62318036_F

Intron Information:

Intron Rank:
142054
Intron Class:
major
Intron Phase:
Intron Coordinates:
62316941 - 62318036
Intron Length:
1096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TATTATTTACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TATTATTTACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
77.5
32.9
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
77.6
0.62
1
70.9
43.7
Minor 5ss
29.1
-2.4
2.8
34.7
41.7
Minor BPS
60.4
0.32
1.8
73.39
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026459
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033613
62314970 - 62318149
3180