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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_62316941_62318449_F

Intron Information:

Intron Rank:
142052
Intron Class:
major
Intron Phase:
Intron Coordinates:
62316941 - 62318449
Intron Length:
1509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CTTCCTTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
77.5
32.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
77.3
0.61
0.8
73.2
30.2
Minor 5ss
29.1
-2.4
2.8
34.7
41.7
Minor BPS
64.1
0.44
1.6
73.01
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026459
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031466
62314159 - 62319075
4917