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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_623861_629337_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
623861 - 629337
Intron Length:
5477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TGTTCCTTCATT
Flanking Amino Acid:
AEDRLHFPSAGCEHPTVRKE
Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
75.6
33.8
Major BPS
79
0.72
1
69
38.9
Major PPT
79.4
0.66
0.8
77.8
29.4
Minor 5ss
28.1
-2.5
3
34.6
41.4
Minor BPS
73.9
0.83
1.7
88.65
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016293
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016998
612390 - 642461
30072