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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_62403116_62403640_R

Intron Information:

Intron Rank:
136387
Intron Class:
major
Intron Phase:
Intron Coordinates:
62403116 - 62403640
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATCA
5'SS Class:
strong_major
3'SS Sequence:
ACATTTTTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
TCGTAATGAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.5
27.7
Major BPS
67.7
0.44
1
58
38.9
Major PPT
71.7
0.49
1.1
75.6
37.7
Minor 5ss
32.8
-2
3
39.5
45.9
Minor BPS
48.9
-0
1.9
62.65
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020796
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027005
62402849 - 62404394
1546