Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_62567886_62593230_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

62567886 - 62593230

Intron Length:

25345

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCCCC

5'SS Class:

strong_major

3'SS Sequence:

GGTGCTTGCTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTTCAA

U12 Branch Point Sequence:

CTTCAAGTAACA

Flanking Amino Acid:

CLVTGHPRPQIRWTKTAGSA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

65.8

40.2

Major BPS

69.4

0.48

71.6

33.8

Major PPT

64.6

0.33

1.1

61.3

44.5

Minor 5ss

33.7

-1.9

42.6

44.4

Minor BPS

-0.3

2.3

63.12

42.6

Associated Gene:

Gene:

MDGA2

Ensembl Gene ID:

ENSAPLG00000014673

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047264

62470826 - 62783744

312919

ENSAPLT00000015285

62470826 - 62784132

313307