Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_62593406_62624288_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

62593406 - 62624288

Intron Length:

30883

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTAAGTAAA

5'SS Class:

major

3'SS Sequence:

TCTGCCTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTTTAT

U12 Branch Point Sequence:

ATGACTTTATCT

Flanking Amino Acid:

AIKSIRVDVYYLDDPIVTVH

Intron Amino Acid Position:

113

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.6

0.63

1.1

76.6

33.9

Major BPS

75.1

0.62

65.6

Major PPT

81.8

0.72

0.8

72.9

37.4

Minor 5ss

-1.4

2.8

52.2

44.4

Minor BPS

60.3

0.4

1.6

74.9

Associated Gene:

Gene:

MDGA2

Ensembl Gene ID:

ENSAPLG00000014673

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015285

62470826 - 62784132

313307

ENSAPLT00000047264

62470826 - 62783744

312919