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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6261186_6264425_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6261186 - 6264425
Intron Length:
3240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGTGAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTGCTTTAAAT
Flanking Amino Acid:
VEKQELEWQKETLQHQTDIL
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1.1
79.6
34.4
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
68.7
0.42
1
65.6
39.8
Minor 5ss
42.8
-0.8
3.2
61.1
43.8
Minor BPS
74.7
0.85
1.4
88.96
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022438
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042407
6247751 - 6286779
39029