About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_62628278_62644003_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62628278 - 62644003
Intron Length:
15726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTCCAC
U12 Branch Point Sequence:
CCCACTCCACCT
Flanking Amino Acid:
MVSFRLSNKTASPSIKLLVD
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
76.2
39.9
Major BPS
48.4
-0.1
1.2
58.1
38.1
Major PPT
85.6
0.8
0.8
80.6
37
Minor 5ss
37.4
-1.4
3.3
52.4
44.8
Minor BPS
38.4
-0.8
1.9
48.73
44.6

Associated Gene:

Gene:
MDGA2
Ensembl Gene ID:
ENSAPLG00000014673
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015285
62470826 - 62784132
313307
ENSAPLT00000014802
62567669 - 62784132
216464
ENSAPLT00000047264
62470826 - 62783744
312919