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Intron Name: Anas_platyrhynchos_platyrhynchos_5_62644274_62661411_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

62644274 - 62661411

Intron Length:

17138

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGCTGA

5'SS Class:

strong_major

3'SS Sequence:

TTTAATATTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ATTTTTTTAATA

Flanking Amino Acid:

AKKSTNIIVRALKKGRFWIT

Intron Amino Acid Position:

273

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.8

0.91

0.9

38.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

81.7

0.71

0.9

78.4

39.4

Minor 5ss

43.2

-0.7

2.9

56.2

47.9

Minor BPS

77.8

0.87

80.84

27.9

Associated Gene:

Gene:

MDGA2

Ensembl Gene ID:

ENSAPLG00000014673

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047264

62470826 - 62783744

312919

ENSAPLT00000015285

62470826 - 62784132

313307

ENSAPLT00000014802

62567669 - 62784132

216464