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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_62661742_62673703_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62661742 - 62673703
Intron Length:
11962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTGAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTAAT
U12 Branch Point Sequence:
TTCTCTTTGAAG
Flanking Amino Acid:
SIDVNISSSTVPPNLTVPQE
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
67
0.42
1.2
67.3
37.8
Major PPT
81.1
0.7
0.9
83
25.8
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
63.8
0.29
1.5
67.27
40.8

Associated Gene:

Gene:
MDGA2
Ensembl Gene ID:
ENSAPLG00000014673
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047264
62470826 - 62783744
312919
ENSAPLT00000015285
62470826 - 62784132
313307
ENSAPLT00000014802
62567669 - 62784132
216464