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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_62757668_62764787_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62757668 - 62764787
Intron Length:
7120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTGTACTAATT
Flanking Amino Acid:
DSTIRVIKYSAPVNPHLREF
Intron Amino Acid Position:
680

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
68.2
42.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
81.4
0.71
0.8
72.6
37.7
Minor 5ss
33
-1.9
2.9
37.5
41.1
Minor BPS
50.7
0.1
2
77.25
39.5

Associated Gene:

Gene:
MDGA2
Ensembl Gene ID:
ENSAPLG00000014673
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047264
62470826 - 62783744
312919
ENSAPLT00000015285
62470826 - 62784132
313307
ENSAPLT00000014802
62567669 - 62784132
216464