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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_62764809_62770030_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62764809 - 62770030
Intron Length:
5222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GCTGTGTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TTCGCCATTACA
Flanking Amino Acid:
KYSAPVNPHLREFHCGFEDG
Intron Amino Acid Position:
687

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1.2
90.9
28.7
Major BPS
73.9
0.59
1
81
30.2
Major PPT
66
0.36
1.1
60.9
44.7
Minor 5ss
43
-0.8
2.9
59.7
38
Minor BPS
50.7
0.01
2.1
68.32
43.7

Associated Gene:

Gene:
MDGA2
Ensembl Gene ID:
ENSAPLG00000014673
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047264
62470826 - 62783744
312919
ENSAPLT00000015285
62470826 - 62784132
313307
ENSAPLT00000014802
62567669 - 62784132
216464