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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_62770187_62771209_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62770187 - 62771209
Intron Length:
1023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
TTCATTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGCAACTTAACA
Flanking Amino Acid:
PNADRTGSKEGFYMYIETSR
Intron Amino Acid Position:
739

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
75.8
35
Major BPS
100
1.24
0.5
100
0
Major PPT
77.5
0.62
0.8
69.6
36.6
Minor 5ss
45.1
-0.5
2.8
60
44.7
Minor BPS
64
0.44
1.6
70.25
41.4

Associated Gene:

Gene:
MDGA2
Ensembl Gene ID:
ENSAPLG00000014673
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015285
62470826 - 62784132
313307
ENSAPLT00000014802
62567669 - 62784132
216464
ENSAPLT00000047264
62470826 - 62783744
312919