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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_62771369_62778085_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62771369 - 62778085
Intron Length:
6717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAA
U12 Branch Point Sequence:
TGCCACTCAAGT
Flanking Amino Acid:
FYYHMYGQHIGSLNVYLRLK
Intron Amino Acid Position:
792

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.3
34.5
Major BPS
65.6
0.39
0.9
67.3
29.6
Major PPT
80.7
0.69
0.7
72.1
32.5
Minor 5ss
28.3
-2.5
3.5
37.3
47.4
Minor BPS
46.3
-0.2
2
63.74
45.7

Associated Gene:

Gene:
MDGA2
Ensembl Gene ID:
ENSAPLG00000014673
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047264
62470826 - 62783744
312919
ENSAPLT00000015285
62470826 - 62784132
313307
ENSAPLT00000014802
62567669 - 62784132
216464