Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_62778217_62783348_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

62778217 - 62783348

Intron Length:

5132

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGAAC

5'SS Class:

strong_major

3'SS Sequence:

TAATTTTTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

TTCTTTATAATT

Flanking Amino Acid:

VNINPPTSFQLIFEGIRGPG

Intron Amino Acid Position:

836

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.1

0.97

0.8

82.1

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

85.8

0.81

0.8

Minor 5ss

32.6

-2

3.1

42.1

Minor BPS

63.2

0.49

1.6

79.74

Associated Gene:

Gene:

MDGA2

Ensembl Gene ID:

ENSAPLG00000014673

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047264

62470826 - 62783744

312919

ENSAPLT00000015285

62470826 - 62784132

313307

ENSAPLT00000014802

62567669 - 62784132

216464