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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_62787561_62788934_F

Intron Information:

Intron Rank:
130755
Intron Class:
major
Intron Phase:
Intron Coordinates:
62787561 - 62788934
Intron Length:
1374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CATCTCCCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTTCTAAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.4
39.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
72.8
0.51
0.8
66.6
29.4
Minor 5ss
30.7
-2.2
3.4
40.4
45.8
Minor BPS
75.7
0.79
1.6
85.68
32.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020187
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023704
62785528 - 62788965
3438