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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_62787561_62789859_F

Intron Information:

Intron Rank:
130757
Intron Class:
major
Intron Phase:
Intron Coordinates:
62787561 - 62789859
Intron Length:
2299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGGA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTGCTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATGTAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.4
39.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.1
0.56
0.9
68.1
37.6
Minor 5ss
30.7
-2.2
3.4
40.4
45.8
Minor BPS
47.7
-0
2.3
75.17
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020187
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042528
62785528 - 62789863
4336