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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_62850181_62853544_F

Intron Information:

Intron Rank:
125876
Intron Class:
major
Intron Phase:
Intron Coordinates:
62850181 - 62853544
Intron Length:
3364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGCCTCCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
CCTGAAATAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.3
31.1
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
78.8
0.65
0.8
70
36.5
Minor 5ss
29.2
-2.4
2.5
25
36.8
Minor BPS
41.5
-0.6
2
49.97
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017810
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033316
62850045 - 62855835
5791