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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_62864454_62868383_R

Intron Information:

Intron Rank:
149531
Intron Class:
major
Intron Phase:
Intron Coordinates:
62864454 - 62868383
Intron Length:
3930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTAAC
U12 Branch Point Sequence:
TTCTCTTCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
59.3
0.23
1.3
61.4
43.2
Major PPT
84.1
0.77
0.7
79.7
25.9
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
54.8
0.14
2
71.01
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027982
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032961
62863317 - 62869336
6020