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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_62868604_62869115_R

Intron Information:

Intron Rank:
149532
Intron Class:
major
Intron Phase:
Intron Coordinates:
62868604 - 62869115
Intron Length:
512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
ATTTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATGTGTTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
76.1
32.7
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
89.5
0.89
0.7
81.7
35.4
Minor 5ss
38.6
-1.3
2.8
51.7
39.2
Minor BPS
44.1
-0.3
2.1
61.84
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027982
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032961
62863317 - 62869336
6020