Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6303237_6305568_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6303237 - 6305568

Intron Length:

2332

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTAAGTCAA

5'SS Class:

major

3'SS Sequence:

TTTATTCTGTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TGATTATTAACT

Flanking Amino Acid:

FYDSSFPTEHVKEGFTASHE

Intron Amino Acid Position:

501

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.3

0.67

1.3

74.1

38.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

0.7

81.3

36.2

Minor 5ss

34.9

-1.7

2.9

40.4

38.9

Minor BPS

69.2

0.68

1.6

82.89

37.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006357

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006601

6298839 - 6305775

6937