Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63052339_63056253_R

Intron Information:

Intron Rank:

147472

Intron Class:

major

Intron Phase:

Intron Coordinates:

63052339 - 63056253

Intron Length:

3915

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGATGT

5'SS Class:

strong_major

3'SS Sequence:

CCTTTTCCAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTAGAT

U12 Branch Point Sequence:

CCTTTTCCAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.3

0.88

0.8

77.6

33.4

Major BPS

66.8

0.42

1.1

64.4

41.8

Major PPT

77.6

0.62

0.8

73.4

30.2

Minor 5ss

34.2

-1.8

3.2

47.6

47.9

Minor BPS

47.5

-0.1

1.9

59.19

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026672

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022199

63051717 - 63057198

5482