About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_630704_632882_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
630704 - 632882
Intron Length:
2179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTACACTTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTCCCTTACAC
Flanking Amino Acid:
DLREDQFQTQLTSYKNPPKV
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
73.4
37.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
69.7
0.44
1
65
40.8
Minor 5ss
38.9
-1.2
2.8
48
47.7
Minor BPS
65.1
0.45
1.7
77.42
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016293
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016998
612390 - 642461
30072