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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6307327_6307861_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6307327 - 6307861
Intron Length:
535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAA
U12 Branch Point Sequence:
TAGTGCTCAAAA
Flanking Amino Acid:
ADDVEAFVIDAVKTKMVYCK
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.9
32.8
Major BPS
72.1
0.55
1.2
63.4
44.3
Major PPT
88.7
0.87
0.7
83.9
31
Minor 5ss
36.3
-1.6
3
48
41.5
Minor BPS
48.7
-0.1
2.1
62.32
43.4

Associated Gene:

Gene:
EIF3M
Ensembl Gene ID:
ENSAPLG00000006196
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006474
6306559 - 6320131
13573