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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6310832_6311257_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6310832 - 6311257
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
GCTTGTTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
AATGTTTAAACT
Flanking Amino Acid:
KFLEGELIHDLLTIFVSAKL
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
83.5
27.9
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
77.4
0.62
0.9
69.2
41.8
Minor 5ss
38.5
-1.3
2.8
50.4
39.3
Minor BPS
53.5
0.19
1.7
70.42
41

Associated Gene:

Gene:
EIF3M
Ensembl Gene ID:
ENSAPLG00000006196
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006474
6306559 - 6320131
13573