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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6311358_6312700_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6311358 - 6312700
Intron Length:
1343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTACTG
5'SS Class:
major
3'SS Sequence:
CTTTTCTAACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
CCTTTTCTAACT
Flanking Amino Acid:
NASQARVDAHRCIVRALKDP
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
59.2
45.5
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
72.2
0.5
0.9
67.6
38
Minor 5ss
34.3
-1.8
3.4
47.5
47.9
Minor BPS
60
0.39
1.7
75.41
41.9

Associated Gene:

Gene:
EIF3M
Ensembl Gene ID:
ENSAPLG00000006196
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006474
6306559 - 6320131
13573