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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6312785_6317247_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6312785 - 6317247
Intron Length:
4463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAAAAA
5'SS Class:
major
3'SS Sequence:
TTTTCTTTCATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAC
U12 Branch Point Sequence:
TTTTCTTTCATA
Flanking Amino Acid:
LYDVLVDCKKSDTAAKVMVE
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
72
32.5
Major BPS
65.7
0.39
1.1
67.4
36.7
Major PPT
87
0.83
0.6
84
24.2
Minor 5ss
38.2
-1.3
2.9
48.3
47.4
Minor BPS
71.1
0.66
1.7
82.68
32.7

Associated Gene:

Gene:
EIF3M
Ensembl Gene ID:
ENSAPLG00000006196
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006474
6306559 - 6320131
13573