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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63128972_63130323_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63128972 - 63130323
Intron Length:
1352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGAGAA
5'SS Class:
major
3'SS Sequence:
TTTTTTGTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTTTTGTGACA
Flanking Amino Acid:
GQLAAKAGNEKKICLTSWSI
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
67.4
33.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
82.2
0.72
1
79.9
37.7
Minor 5ss
22.9
-3.1
3.3
28.2
43.9
Minor BPS
59
0.28
2
77.15
33.9

Associated Gene:

Gene:
MIS18BP1
Ensembl Gene ID:
ENSAPLG00000011593
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012104
63126705 - 63148052
21348