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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63138443_63140063_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63138443 - 63140063
Intron Length:
1621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCATCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TCATCATATACT
Flanking Amino Acid:
VEEKAKSKDKGKNSQKGVSS
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
83.4
0.75
0.8
81
30.8
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
47.6
-0.1
2.2
69.99
46.3

Associated Gene:

Gene:
MIS18BP1
Ensembl Gene ID:
ENSAPLG00000011593
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012104
63126705 - 63148052
21348