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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63144364_63146286_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63144364 - 63146286
Intron Length:
1923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTGGCTTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
AGGTCACTGACT
Flanking Amino Acid:
ATPFQNRRVKLPMFPGSHED
Intron Amino Acid Position:
829

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
75.1
41.1
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
72.6
0.51
0.9
66
40.8
Minor 5ss
37.2
-1.4
3.1
49.5
46.7
Minor BPS
48.8
-0
2
68.6
41.7

Associated Gene:

Gene:
MIS18BP1
Ensembl Gene ID:
ENSAPLG00000011593
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012104
63126705 - 63148052
21348