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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63147807_63147957_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63147807 - 63147957
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTG
Flanking Amino Acid:
SSRPKFTFNKKVREASVAGK
Intron Amino Acid Position:
925

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.6
33.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
89.7
0.89
0.7
85.4
27.6
Minor 5ss
39.2
-1.2
2.8
51.8
39
Minor BPS
68.9
0.45
1.6
74.56
38.3

Associated Gene:

Gene:
MIS18BP1
Ensembl Gene ID:
ENSAPLG00000011593
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012104
63126705 - 63148052
21348