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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63157308_63160774_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63157308 - 63160774
Intron Length:
3467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGGAAT
5'SS Class:
major
3'SS Sequence:
TTTCCCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
CTAGCTAAAATT
Flanking Amino Acid:
QKVKSDFTCRNAARQFLDDE
Intron Amino Acid Position:
1626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.1
71.3
40.1
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
86.3
0.82
0.6
85.1
22.3
Minor 5ss
39.6
-1.2
3.2
48.4
47.6
Minor BPS
44.7
-0.3
1.9
60.76
43.7

Associated Gene:

Gene:
FANCM
Ensembl Gene ID:
ENSAPLG00000011095
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011566
63150455 - 63222780
72326
ENSAPLT00000043453
63150455 - 63222780
72326