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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63161702_63164044_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63161702 - 63164044
Intron Length:
2343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGGAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TGTTGCTTATTA
Flanking Amino Acid:
IRASRVCPAEGTSSESEEEI
Intron Amino Acid Position:
1531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
73
38.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
85.5
0.8
0.7
81.9
29.7
Minor 5ss
29.5
-2.3
3.8
45.4
49.7
Minor BPS
57.2
0.22
2
71.84
40.7

Associated Gene:

Gene:
FANCM
Ensembl Gene ID:
ENSAPLG00000011095
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043453
63150455 - 63222780
72326
ENSAPLT00000011566
63150455 - 63222780
72326