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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6317343_6317867_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6317343 - 6317867
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTAAT
5'SS Class:
strong_major
3'SS Sequence:
GTATTCTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCCTTTTCACT
Flanking Amino Acid:
IQYIPTELDQVRKWISDWNL
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
88.9
24.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
72.3
0.5
0.8
70.5
36
Minor 5ss
37.5
-1.4
2.8
51.2
45.3
Minor BPS
57.6
0.32
1.7
76.22
41

Associated Gene:

Gene:
EIF3M
Ensembl Gene ID:
ENSAPLG00000006196
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006474
6306559 - 6320131
13573