About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6317992_6318298_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6317992 - 6318298
Intron Length:
307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
GTTTGTGGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTAAACTCAATT
Flanking Amino Acid:
EGERPSLRLQLLSNLFHGMD
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
68
0.41
1.1
65.8
45.3
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
56
0.27
1.8
75.49
40.7

Associated Gene:

Gene:
EIF3M
Ensembl Gene ID:
ENSAPLG00000006196
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006474
6306559 - 6320131
13573