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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6318438_6319791_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6318438 - 6319791
Intron Length:
1354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGCTCC
5'SS Class:
major
3'SS Sequence:
TCGTTTTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CAATTTTAAACA
Flanking Amino Acid:
CDVCLKEDDKDVESVMNSVV
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.2
60.6
39.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80
0.68
0.9
76.3
37.7
Minor 5ss
47.6
-0.2
2.4
60.7
43.9
Minor BPS
53.2
0.1
1.7
60.29
40.1

Associated Gene:

Gene:
EIF3M
Ensembl Gene ID:
ENSAPLG00000006196
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006474
6306559 - 6320131
13573