About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63196978_63197763_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63196978 - 63197763
Intron Length:
786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
ATCTCCCTAATT
Flanking Amino Acid:
YRKNPSSQNKGIQQGVIEGD
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
82
29.3
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
84.8
0.78
0.8
80.2
32
Minor 5ss
36.6
-1.5
3.4
52
45.2
Minor BPS
68.9
0.67
1.7
83.1
38.1

Associated Gene:

Gene:
FANCM
Ensembl Gene ID:
ENSAPLG00000011095
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043453
63150455 - 63222780
72326
ENSAPLT00000011566
63150455 - 63222780
72326