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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63197896_63219900_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63197896 - 63219900
Intron Length:
22005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CATCTCTTACAT
Flanking Amino Acid:
LTEVQNAYIQVLETFAGRLI
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
78
0.63
0.9
71.7
38.2
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
50.5
0.09
1.7
67.41
43.1

Associated Gene:

Gene:
FANCM
Ensembl Gene ID:
ENSAPLG00000011095
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043453
63150455 - 63222780
72326
ENSAPLT00000011566
63150455 - 63222780
72326