About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63205618_63211194_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63205618 - 63211194
Intron Length:
5577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTATTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AATGCCTTATTT
Flanking Amino Acid:
GRGHQVDVPRDMAEPIQQLT
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
67.3
36.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.8
0.74
0.8
78.6
34.1
Minor 5ss
32.2
-2
3.4
44
43.3
Minor BPS
61.4
0.44
1.7
75.44
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011473
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011942
63205389 - 63214740
9352