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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63212688_63213967_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63212688 - 63213967
Intron Length:
1280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCACCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTCTAAAAGT
Flanking Amino Acid:
MRYICEQNSSGLYLGITIPI
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.7
34.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
77.5
0.62
0.9
74.9
34.7
Minor 5ss
37.5
-1.4
2.8
52.1
44.3
Minor BPS
51.3
0.12
2.2
80.33
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011473
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011942
63205389 - 63214740
9352