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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63214152_63214568_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63214152 - 63214568
Intron Length:
417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTGATTGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGATATGAAGT
Flanking Amino Acid:
EEWPSTIVYSRSFRGITNED
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.5
0.64
1
72.3
42.5
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
46
-0.2
2
66.41
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011473
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011942
63205389 - 63214740
9352