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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63223005_63223113_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63223005 - 63223113
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGCCG
5'SS Class:
major
3'SS Sequence:
CCGCCCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
GGGGCCCTGACG
Flanking Amino Acid:
AAYTQLFHTQRFRGTEGAEP
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
54
44.7
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
64.8
0.33
0.8
57.5
26.9
Minor 5ss
24.2
-3
3.2
29.7
43.3
Minor BPS
46.7
-0.4
1.9
48.94
44.5

Associated Gene:

Gene:
FKBP3
Ensembl Gene ID:
ENSAPLG00000011063
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011514
63222701 - 63226959
4259