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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63223431_63224416_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63223431 - 63224416
Intron Length:
986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGCCG
5'SS Class:
major
3'SS Sequence:
TACTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TGGTGTTAAAGC
Flanking Amino Acid:
GTVFDTNVQTGSKKKKAAKP
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
54
44.7
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
86.9
0.83
0.7
84.8
29.6
Minor 5ss
25.2
-2.9
3
22.7
36.8
Minor BPS
43.5
-0.5
2.2
53.95
44.5

Associated Gene:

Gene:
FKBP3
Ensembl Gene ID:
ENSAPLG00000011063
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011514
63222701 - 63226959
4259